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Work Background
42HexagonsCEO de 42Hexagons
Aug. 2019 - Oct. 2023Lyon, Auvergne-Rhône-Alpes, France · HybridCEO (Directeur Général) de 42Hexagons, entreprise qui développe des applications mobiles pour aider les travailleurs de la Gig Economy. L'idée est partie de ma propre expérience en tant que livreur de colis Amazon. L'entreprise a été bootstrapée, s'est basée sur le dogfooding et est internationale. J'ai été développeur tout en étant DG, pour finalement me concentrer sur le poste de DG. J'ai mené l'entreprise de 0 a 300 000$ de CA, avec 90% de marge, en 3 ans.
The Broad Institute of MIT and HarvardBio-informatics Lead - Software Engineer
Mar. 2019 - Aug. 2023Cambridge, Massachusetts, USAJoined the team CCLF (Cancer Cell Line Factory) as a Bio-informatics Lead. My main tasks are:
- Supervise, maintain and improve our IT infrastructure (30 To of data, 2To of data processed every 2 weeks)
- Build software to increase the efficiency of our team members (Research Associates and Managers) and reduce human errors
- Create a Machine Learning algorithm capable of predicting the best biological conditions to grow cancer cell lines Languages:
- Python
- Kotlin Libraries:
- Pandas (Data manipulation)
- Scikit-learn (Statistical/Machine Learning tools)
- Seaborn (Data Visualization) Automation platform and tools:
- Jenkins
- Firecloud/Terra Development environment:
- PyCharm
- Jupyter Notebooks/Lab Infrastructure:
- Google Cloud (App Engine, Compute Engine, API & Services)
- Docker
The Broad Institute of MIT and HarvardSoftware Engineer - Cancer Data Science
Nov. 2016 - Aug. 2023Cambridge, Massachusetts, USAIn the Cancer Data Science team, I mainly had two tasks:
- Develop software to help my team and the Broad Institute performing research
- Port the research scripts to optimized, shareable and maintainable software Some links of my work:
- Team website : http://www.cancerdatascience.org/
- Website to access resources of a research paper about RNA Interference/Cancer vulnerabilities: https://depmap.org/rnai/
- Website presenting and explaining the Broad Cancer dependencies project (DepMap): https://depmap.org/
- Website of the Broad Cancer dependencies project (DepMap): https://cds.team/depmap/
- Website 'a la Google Drive', to store, manage and analyze biological data: https://cds.team/taiga (Only accessible for Broad internal, github repository => https://github.com/broadinstitute/taiga) Technologies:
- Jekyll
- React
- Javascript and TypeScript
- Flask
- Jinja2 - Python 2.7 and 3.5
- Pandas Library (Python) - Docker
- Ansible - AWS EC2, RDS (PostGreSQL), ECS
- Amazon Alexa (for project DepMap related questions)
George Washington UniversityGalaxy Project - Senior Research associate - Software engineer
Dec. 2015 - Nov. 2016Washington D.C. Metro AreaIn Goecks' Lab, main developer of a new genome browser using Galaxy Project (https://dx.doi.org/10.6084/m9.figshare.3456203.v1):
- http://gonramp.wustl.edu/
- http://goeckslab.org/
- https://usegalaxy.org/ Links to my work:
- https://github.com/goeckslab/hub-archive-creator
- https://github.com/galaxyproject/galaxy (as a contributor)
- https://github.com/remimarenco/gonramp
Cancer Research UKGalaxy Project - Bioinformatics Engineer
Sep. 2015 - Dec. 2015Cambridge, United KingdomIn the Bioinformatics Core team at CRUK, in Cambridge UK, my role was to bring the Galaxy instances of the Galaxy Project (https://galaxyproject.org/) to a robust and efficient Production level. I also helped in adding useful tools in this specific instance, as well as trained CRUK members and students to use Galaxy.
AutoEntreprise MarencoFreelance Software Engineer
Nov. 2014 - Dec. 2015As a Freelance, I have done :
- Teacher in the engineer school CPE (http://www.cpe.fr/?lang=en)
- JSF 1.2 job on an AS400
- Open-source work (https://github.com/remimarenco) - Javascript/ReactJs software to generate reports for next generation sequencing data (https://github.com/remimarenco/JsCoverageQC)
INTITEKSoftware Engineer
Jun. 2014 - Oct. 2014Lyon, FranceAs a software developer for the University Hospitals of Lyon, my main task was to improve the core IT system that manages and connects all the hospitals' applications :
- Analyze and rewrite core modules for the new Architecture
- Manage an old architecture module Languages : C# / Framework Asp.Net MVC 4 and 5 / EF 6 / Bootstrap 3 / Knockout.js
MarencoFreelance as Software Engineer
Mar. 2013 - Sep. 2013Lyon, FranceI have been Freelance, while I was running my company, as people asked me some custom development. - My first task has been consultant for a mobile application (Appcelerator Titanium)
- Second one was to create a dynamic images gallery for BKYC (https://github.com/remimarenco/dbig)
- Third one was to help sol-sys company to migrate its AS400 web-services to JSF 2.0 (http://www.sol-sys.fr/)
- Last one was to provide security advices to the company Unilyone Business Game Languages : Appcelerator Titanium, Javascript, Wordpress, HTML5, CSS3, JSF 2.0, AS400
Pousse De BambinCo-founder - CTO
Oct. 2012 - Jun. 2014Lyon, Francehttp://poussedebambin.azurewebsites.net/ Pousse De Bambin has been created to help future parents manage the presents bought by relatives and friends through the use of a birthlist. I managed all the technical aspects (infrastructure, technology choice, development, support) as well as all the founder tasks (team management of 4 people, work planification, grants management, financial planification). The project has been hosted in the business incubator of EM Lyon. Tools / Languages : Trello, ASP.Net MVC 4/5, Git, Visual Studio 2012/2013, TFS, C#, Bootstrap 2/3, EF 6, .Net 4.5, Azure http://poussedebambin.azurewebsites.net/
Emory UniversityPython software engineer (intern)
Jul. 2012 - Sep. 2012Atlanta, USAMy work was to fix bugs and add functionalities to the Galaxy software (http://galaxy.psu.edu/).
Also, I set up a "next-generation" forum, StackOverflow like, in Python/Django and connected it with Galaxy (https://github.com/galaxyQandA). Galaxy Project released it a few months ago : https://biostar.usegalaxy.org/
BullPart-time Software Engineer
May. 2011 - Sep. 2013Limonest, FranceAs a part-time software developer engineer at Bull SAS, I : - Developed from scratch a Java / Ant project for Sanofi Pasteur which purpose was to check Documentum installations
- Developed, with 3 others co-workers, a software for Cegelec to facilitate the french road maintenance (J2EE, SEAM Framework)
- Developed a new workflow in the CRM Selligent for the GIPS
- Developed, in a team of 5 developers, a platform for auctions for Keolis (ASP.Net MVC 4)
- Fixed Bugs and developed evolutions in SugarCRM for CG33
NOVEALISPart-time software engineer
Sep. 2009 - Apr. 2011Région de Lyon, FranceIn the medical field, I developed software for radiology clinics (RIS plugins, professional instant messenger conferencing)
University of TeessideWebServices research and development (intern)
Mar. 2009 - Jun. 2009Middlesbrough, EnglandSearch for innovation in web-services, based on a Second Life like virtual world. Language used was Smalltalk-80 / Croquet.
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