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Work Background
Universal Diagnostics S.A.Deep Learning Developer
Jan. 2024Barcelona, Catalonia, SpainEarly cancer detection of colorectal cancer from liquid biopsy.
Deep learning methods for cancer prediction.
Methylation, fragmentation, Genomics.
Centre for Genomic Regulation (CRG)PhD candidate in Bioinformatics
Sep. 2022 - Jan. 2024Barcelona, Catalonia, SpainDeep Learning applications in synthetic genomics
Single cell genomics (RNAseq, ATACseq)
NLP, BERT, convolutional neural networks (CNN), recurrent neural networks (RNN)
Active learning, mechanistic models
Novo Nordisk Foundation Center for Protein Research, University of CopenhagenResearch Assistant in Deep Learning and genomics
Jan. 2022 - Sep. 2022Copenhagen, Capital Region, Denmark
DTU - Technical University of DenmarkTeaching assistant - Deep Learning
Sep. 2021 - Jan. 2022Copenhagen, Capital Region, DenmarkFeed forward neural networks
Recurrent neural networks
Convolutional neural networks
Reinforcement learning
Variational autoencoders
Supervision of small projects for master students
Novo Nordisk Foundation Center for Protein Research, University of CopenhagenMaster Thesis in Machine Learning and Genomics
Jun. 2021 - Dec. 2021Copenhagen, Capital Region, DenmarkUse Variational autoencoders to cluster SNPs array data.
Prediction of genetic population structure data.
Dimensionality reduction : PCA, UMAP, t-SNE, VAEs.
Ancestry prediction using latent spaces for classification.
Pipeline development in Python using Snakemake.
NovozymesStudent Software developer in Bioinformatics / Data management
Jun. 2020 - Jun. 2021Lyngby Tårbæk, Capital Region, DenmarkSoftware development in Python to support microbial whole genome sequencing.
Django and dash app development.
Open-source Python development.
Continuous integration.
The Novo Nordisk Foundation Center for BiosustainabilityStudent Research Assistant
Feb. 2020 - Sep. 2020Kongens Lyngby, Capital Region, DenmarkAutomation and workflow development for Omic experiments.
Data analysis of Omic results.
RigshospitaletInternship in Data Analysis (scRNA-seq)
Feb. 2020 - Apr. 2020Copenhagen Area, Capital Region, Denmark- Data Analysis of results gathered from different methods of scRNA-seq.
Eurecat - Technology Centre of CataloniaGenomics Technician
Jun. 2019 - Aug. 2019Reus Area, Spain- Building Next Generation Sequencing libraries with a focus on metagenomics. - Molecular Biology standard techniques (PCR, electrophoresis, qPCR, DNA/RNA purification, etc). - Data analysis of expression data.
Laboratory Biology and Modelling of the Cell (LBMC), ENS de LyonInternship in Microbial genetics
Feb. 2019 - May. 2019Lyon y alrededores, Francia- Optimization of an Optogenetic tool in S. cereviseae and mammalian cell cultures.
- Cell culture both microbial and human cells.
- Time series analysis using R.
- FACS
TECNENOL - University Rovira i VirgiliInternship in Biochemistry
Jun. 2018 - Aug. 2018Tarragona, SpainAssistance in a project about DNA extraction methods in plant tissues.
TECNENOLInternship in Genetics
Jun. 2017 - Aug. 2017Tarragona, EspagneCharacterisation of Vitis vinifera varieties by the analysis of single stranded repeats (SSR)
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